Olsen Lab Publications


5-Hydroxymethylcytosine in Cell-Free DNA Predicts Immunotherapy Response in Lung Cancer
Shao, J, Xu, Y, Olsen, RJ, Kasparian, S, Sun, K, Mathur, S, Zhang, J, He, C, Chen, SH, Bernicker, EH & Li, Z 2024, , Cells, vol. 13, no. 8, 715. https://doi.org/10.3390/cells13080715

Cell-Free DNA 5-Hydroxymethylcytosine Signatures for Lung Cancer Prognosis
Shao, J, Olsen, RJ, Kasparian, S, He, C, Bernicker, EH & Li, Z 2024, , Cells, vol. 13, no. 4, 298. https://doi.org/10.3390/cells13040298

Engineered probiotic overcomes pathogen defences using signal interference and antibiotic production to treat infection in mice
Do, H, Li, ZR, Tripathi, PK, Mitra, S, Guerra, S, Dash, A, Weerasekera, D, Makthal, N, Shams, S, Aggarwal, S, Singh, BB, Gu, D, Du, Y, Olsen, RJ, LaRock, C, Zhang, W & Kumaraswami, M 2024, , Nature Microbiology, vol. 9, no. 2, 9, pp. 502-513. https://doi.org/10.1038/s41564-023-01583-9

Integrating genomics, transcriptomics and virulence to study Streptococcus dysgalactiae subspecies equisimilis (SDSE) strains causing severe infections in humans
Eraso, JM, Beres, SB, Olsen, RJ, Long, SW, Gadd, R, Boukthir, S, Faili, A, Kayal, S & Musser, JM 2023, , Tissue, Matrix & Pathobiology Meeting, Salt lake City, United States, 10/22/23 - 10/25/23.

The response of mpox-associated inflammatory syndrome to steroid therapy
Arias, CA, Miller, WR, Olsen, RJ, Gollihar, J & Armstrong, A 2023, , The Lancet Infectious Diseases, vol. 23, no. 8, pp. e323-e324. https://doi.org/10.1016/S1473-3099(22)00876-3

Analysis of the Genomics and Mouse Virulence of an Emergent Clone of Streptococcus dysgalactiae Subspecies equisimilis
Beres, SB, Olsen, RJ, Wesley Long, S, Eraso, JM, Boukthir, S, Faili, A, Kayal, S & Musser, JM 2023, , Microbiology Spectrum, vol. 11, no. 2. https://doi.org/10.1128/spectrum.04550-22

Genome-Wide Transposon Mutagenesis Screens Identify Group A Streptococcus Genes Affecting Susceptibility to ß-Lactam Antibiotics
Zhu, L, Eraso, JM, Mangham, RE, Saavedra, MO, Olsen, RJ, Beres, SB & Musser, JM 2022, , Journal of bacteriology, vol. 204, no. 12. https://doi.org/10.1128/jb.00287-22

SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York City
Vandegrift, KJ, Yon, M, Surendran Nair, M, Gontu, A, Ramasamy, S, Amirthalingam, S, Neerukonda, S, Nissly, RH, Chothe, SK, Jakka, P, LaBella, L, Levine, N, Rodriguez, S, Chen, C, Sheersh Boorla, V, Stuber, T, Boulanger, JR, Kotschwar, N, Aucoin, SG, Simon, R, Toal, KL, Olsen, RJ, Davis, JJ, Bold, D, Gaudreault, NN, Dinali Perera, K, Kim, Y, Chang, KO, Maranas, CD, Richt, JA, Musser, JM, Hudson, PJ, Kapur, V & Kuchipudi, SV 2022, , Viruses, vol. 14, no. 12, 2770. https://doi.org/10.3390/v14122770

A Chimeric Penicillin Binding Protein 2X Significantly Decreases in Vitro Beta-Lactam Susceptibility and Increases in Vivo Fitness of Streptococcus pyogenes
Olsen, RJ, Zhu, L, Mangham, RE, Faili, A, Kayal, S, Beres, SB & Musser, JM 2022, , American Journal of Pathology, vol. 192, no. 10, pp. 1397-1406. https://doi.org/10.1016/j.ajpath.2022.06.011

Alignment of Fellowship Training with Practice Patterns for Molecular Pathologists: A Report of the Association for Molecular Pathology Training and Education Committee
Velu, PD, Cushman-Vokoun, A, Ewalt, MD, Feilotter, H, Gastier-Foster, JM, Goswami, RS, Laudadio, J, Olsen, RJ, Johnson, R, Schlinsog, A, Douglas, A, Sandersfeld, T & Kaul, KL 2022, , Journal of Molecular Diagnostics, vol. 24, no. 8, pp. 825-840. https://doi.org/10.1016/j.jmoldx.2022.04.011

Transmission history of SARS-CoV-2 in humans and white-tailed deer
Willgert, K, Didelot, X, Surendran-Nair, M, Kuchipudi, SV, Ruden, RM, Yon, M, Nissly, RH, Vandegrift, KJ, Nelli, RK, Li, L, Jayarao, BM, Levine, N, Olsen, RJ, Davis, JJ, Musser, JM, Hudson, PJ, Kapur, V & Conlan, AJK 2022, , Scientific Reports, vol. 12, no. 1, 12094, pp. 12094. https://doi.org/10.1038/s41598-022-16071-z

AHCC® Supplementation to Support Immune Function to Clear Persistent Human Papillomavirus Infections
Smith, JA, Gaikwad, AA, Mathew, L, Rech, B, Faro, JP, Lucci, JA, Bai, Y, Olsen, RJ & Byrd, TT 2022, , Frontiers in Oncology, vol. 12, 881902, pp. 881902. https://doi.org/10.3389/fonc.2022.881902

Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas
Christensen, PA, Olsen, RJ, Long, SW, Snehal, R, Davis, JJ, Ojeda Saavedra, M, Reppond, K, Shyer, MN, Cambric, J, Gadd, R, Thakur, RM, Batajoo, A, Mangham, R, Pena, S, Trinh, T, Kinskey, JC, Williams, G, Olson, R, Gollihar, J & Musser, JM 2022, , American Journal of Pathology, vol. 192, no. 4, pp. 642-652. https://doi.org/10.1016/j.ajpath.2022.01.007

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer
Kuchipudi, SV, Surendran-Nair, M, Ruden, RM, Yon, M, Nissly, RH, Vandegrift, KJ, Nelli, RK, Li, L, Jayarao, BM, Maranas, CD, Levine, N, Willgert, K, Conlan, AJK, Olsen, RJ, Davis, JJ, Musser, JM, Hudson, PJ & Kapur, V 2022, , Proceedings of the National Academy of Sciences of the United States of America, vol. 119, no. 6, e2121644119. https://doi.org/10.1073/pnas.2121644119

Delta Variants of SARS-CoV-2 Cause Significantly Increased Vaccine Breakthrough COVID-19 Cases in Houston, Texas
Christensen, PA, Olsen, RJ, Long, SW, Subedi, S, Davis, JJ, Hodjat, P, Walley, DR, Kinskey, JC, Ojeda Saavedra, M, Pruitt, L, Reppond, K, Shyer, MN, Cambric, J, Gadd, R, Thakur, RM, Batajoo, A, Mangham, R, Pena, S, Trinh, T, Yerramilli, P, Nguyen, M, Olson, R, Snehal, R, Gollihar, J & Musser, JM 2022, , American Journal of Pathology, vol. 192, no. 2, pp. 320-331. https://doi.org/10.1016/j.ajpath.2021.10.019

Integrative Reverse Genetic Analysis Identifies Polymorphisms Contributing to Decreased Antimicrobial Agent Susceptibility in Streptococcus pyogenes
Beres, SB, Zhu, L, Pruitt, L, Olsen, RJ, Faili, A, Kayal, S & Musser, JM 2022, , mBio, vol. 13, no. 1, e03618, pp. e0361821. https://doi.org/10.1128/MBIO.03618-21

Molecular Signatures of KRAS-Mutated Lung Adenocarcinoma: Analysis of Concomitant EGFR, ALK, STK11, and PD-L1 Status
Hsu, J, Annunziata, JF, Burns, E, Bernicker, EH, Olsen, RJ & Thomas, JS 2022, , Clinical Pathology, vol. 15, pp. 2632010X221102054. https://doi.org/10.1177/2632010X221102054

Antibody escape and cryptic cross-domain stabilization in the SARS-CoV-2 Omicron spike protein
Javanmardi, K, Segall-Shapiro, TH, Chou, CW, Boutz, DR, Olsen, RJ, Xie, X, Xia, H, Shi, PY, Johnson, CD, Annapareddy, A, Weaver, S, Musser, JM, Ellington, AD, Finkelstein, IJ & Gollihar, JD 2022, , Cell Host and Microbe, vol. 30, no. 9, pp. 1242-1254.e6. https://doi.org/10.1016/j.chom.2022.07.016

Genome-wide transposon mutagenesis screens identify group A streptococcus genes affecting susceptibility to beta-lactam antibiotics
Zhu, L, Eraso, JM, Mangham, R, Ojeda Saavedra, M, Olsen, RJ, Beres, SB & Musser, JM 2022, , Journal of bacteriology. https://doi.org/10.1128/jb.00287-22

Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein
Davis, JJ, Wesley Long, S, Christensen, PA, Olsen, RJ, Olson, R, Shukla, M, Subedi, S, Stevens, R & Musser, JM 2021, , Microbiology Spectrum, vol. 9, no. 3, e01803. https://doi.org/10.1128/SPECTRUM.01803-21